Mass spectrometry

[9] Calutron mass spectrometers were used for uranium enrichment at the Oak Ridge, Tennessee Y-12 plant established during World War II.In 1989, half of the Nobel Prize in Physics was awarded to Hans Dehmelt and Wolfgang Paul for the development of the ion trap technique in the 1950s and 1960s.Two techniques often used with liquid and solid biological samples include electrospray ionization (invented by John Fenn[11]) and matrix-assisted laser desorption/ionization (MALDI, initially developed as a similar technique "Soft Laser Desorption (SLD)" by K. Tanaka[12] for which a Nobel Prize was awarded and as MALDI by M. Karas and F. Hillenkamp[13]).For example, electron ionization (EI) gives a high degree of fragmentation, yielding highly detailed mass spectra which when skilfully analysed can provide important information for structural elucidation/characterisation and facilitate identification of unknown compounds by comparison to mass spectral libraries obtained under identical operating conditions.Inductively coupled plasma (ICP) sources are used primarily for cation analysis of a wide array of sample types.Photoionization can be used in experiments which seek to use mass spectrometry as a means of resolving chemical kinetics mechanisms and isomeric product branching.[14] In such instances a high energy photon, either X-ray or uv, is used to dissociate stable gaseous molecules in a carrier gas of He or Ar.[16] The time-of-flight (TOF) analyzer uses an electric field to accelerate the ions through the same potential, and then measures the time they take to reach the detector.This novel type of instrument leads to an additional performance enhancement in terms of resolution and/or sensitivity depending upon the magnitude and orientation of the applied magnetic field.If a quadrupole is made to rapidly and repetitively cycle through a range of mass filter settings, full spectra can be reported.The sample is ionized either internally (e.g. with an electron or laser beam), or externally, in which case the ions are often introduced through an aperture in an endcap electrode.[29] In FTMS and Orbitraps, the detector consists of a pair of metal surfaces within the mass analyzer/ion trap region which the ions only pass near as they oscillate.The METLIN Metabolite and Chemical Entity Database[33][34][35][36] is the largest repository of experimental tandem mass spectrometry data acquired from standards.[38] All tandem mass spectrometry data comes from the experimental analysis of standards at multiple collision energies and in both positive and negative ionization modes.[33] When a specific combination of source, analyzer, and detector becomes conventional in practice, a compound acronym may arise to designate it succinctly.[40] Similarly to gas chromatography MS (GC-MS), liquid chromatography-mass spectrometry (LC/MS or LC-MS) separates compounds chromatographically before they are introduced to the ion source and mass spectrometer.Tandem mass spectrometry purposely produces fragment ions post-source and can drastically change the sort of data achieved by an experiment.Computer simulation of ionization and fragmentation processes occurring in mass spectrometer is the primary tool for assigning structure or peptide sequence to a molecule.[49] As an analytical technique it possesses distinct advantages such as: Increased sensitivity over most other analytical techniques because the analyzer, as a mass-charge filter, reduces background interference, Excellent specificity from characteristic fragmentation patterns to identify unknowns or confirm the presence of suspected compounds, Information about molecular weight, Information about the isotopic abundance of elements, Temporally resolved chemical data.(see protein characterization below) Membrane-introduction mass spectrometry combines the isotope ratio MS with a reaction chamber/cell separated by a gas-permeable membrane.[52][53] A residual gas analyzer (RGA) is a small and usually rugged mass spectrometer, typically designed for process control and contamination monitoring in vacuum systems.RGAs may be found in high vacuum applications such as research chambers, surface science setups, accelerators, scanning microscopes, etc.RGAs are used in most cases to monitor the quality of the vacuum and easily detect minute traces of impurities in the low-pressure gas environment.Pharmacokinetics is often studied using mass spectrometry because of the complex nature of the matrix (often blood or urine) and the need for high sensitivity to observe low dose and long time point data.[54][55][56] There is currently considerable interest in the use of very high sensitivity mass spectrometry for microdosing studies, which are seen as a promising alternative to animal experimentation.Recent studies show that secondary electrospray ionization (SESI) is a powerful technique to monitor drug kinetics via breath analysis.In the second, proteins are enzymatically digested into smaller peptides using proteases such as trypsin or pepsin, either in solution or in gel after electrophoretic separation.In early 2005 the Cassini–Huygens mission delivered a specialized GC-MS instrument aboard the Huygens probe through the atmosphere of Titan, the largest moon of the planet Saturn.The uniqueness of this magnetic sector mass spectrometer may have been the fact that a plane of detectors, each purposely positioned to collect all of the ion species expected to be in the samples, allowed the instrument to simultaneously report all of the gases respired by the patient.[68] The primary function of mass spectrometry is as a tool for chemical analyses based on detection and quantification of ions according to their mass-to-charge ratio.
Discovery of Neon Isotopes
Replica of F.W. Aston 's third mass spectrometer
Calutron mass spectrometers were used in the Manhattan Project for uranium enrichment.
Schematics of a simple mass spectrometer with sector type mass analyzer. This one is for the measurement of carbon dioxide isotope ratios ( IRMS ) as in the carbon-13 urea breath test .
Quadrupole mass spectrometer and electrospray ion source used for Fenn's early work
Inductively coupled plasma ion source
ThermoQuest AvantGarde sector mass spectrometer
Orbitrap mass analyzer
Fourier-transform ion cyclotron resonance mass spectrometer
A continuous dynode particle multiplier detector
Tandem mass spectrometry for biological molecules using ESI or MALDI
A gas chromatograph (right) directly coupled to a mass spectrometer (left)
Mass spectrum of a peptide showing the isotopic distribution
Toluene electron ionization mass spectrum
NOAA Particle Analysis by Laser Mass Spectrometry aerosol mass spectrometer aboard a NASA WB-57 high-altitude research aircraft
Mass spectrometer to determine the 16 O/ 18 O and 12 C/ 13 C isotope ratio on biogenous carbonate
Residual gas analyzer installed on a laboratory-scale freeze dryer
NASA's Phoenix Mars Lander analyzing a soil sample from the "Rosy Red" trench with the TEGA mass spectrometer
mass-to-charge ratiomass spectrumisotopic signaturemoleculeschemical compoundsIsotopesionizedbeam of electronselectron multiplierHistory of mass spectrometryF.W. AstonEugen Goldsteingas dischargescathodecathode raysanode rayscanal raysWilhelm Wienelectricmagnetic fieldsJ. J. ThomsonCalutronManhattan Projectinternational scientific vocabularymass spectrographsspectrumphotographic platephosphoroscilloscopespectroscopyArthur Jeffrey DempsterSector mass spectrometerscalutronsErnest O. Lawrenceisotopes of uraniumuranium enrichmentOak Ridge, TennesseeY-12 plantNobel Prize in PhysicsHans DehmeltWolfgang Paulion trap techniqueNobel Prize in ChemistryJohn Bennett Fennelectrospray ionizationKoichi Tanakasoft laser desorptionmacromoleculesproteinsisotopecarbon-13urea breath testionizersectorsodium chloridevaporizedsodiumchloridemonoisotopicdaltonsmagneticNewton's second law of motionSurface ionizationArgonne National Laboratoryion sourceelectric fieldsElectron ionizationchemical ionizationvaporsliquidJohn Fennmatrix-assisted laser desorption/ionizationion sourcesfast atom bombardmentatmospheric-pressure chemical ionizationatmospheric-pressure photoionizationdesorption electrospray ionizationInductively coupled plasmaPhotoionizationsynchrotronatmospheric pressure photoionizationambient ionizationDirect Analysis in Real TimeSoft Ionization by Chemical Reaction in Transferglow dischargefield desorptionthermospraydesorption/ionization on siliconatmospheric pressure chemical ionizationsecondary ion mass spectrometryspark ionizationthermal ionizationLorentz force lawNewton's second lawvector cross productdifferential equationcharged particlesdimensionlesselementary chargestandem mass spectrometry (MS/MS)mass resolving powermilli mass unitsSector mass spectrometervelocitychargedsector instrumentstime-of-flight mass spectrometrytime-of-flightelectric fieldpotentialchargekinetic energiesvelocitiesmassesdelayed extractionQuadrupole mass analyzerQuadrupole mass analyzersradio frequencyquadrupolequadrupole ion traptandem mass spectrometrycylindrical ion trap mass spectrometerlinear quadrupole ion trapOrbitrapFourier-transform ion cyclotron resonanceelectrostaticallyFourier transformationFourier-transform mass spectrometrycyclotroningPenning trapion trapdeconvolutedFourier transformresolutionIon cyclotron resonanceFaraday cupsion-to-photon detectorsMicrochannel plate detectorsOrbitrapstandem mass spectrometerpeptidecollision-induced dissociationfragmentingelectron capture dissociationelectron transfer dissociationinfrared multiphoton dissociationblackbody infrared radiative dissociationelectron-detachment dissociationsurface-induced dissociationselected reaction monitoringradiocarbon datingaccelerator mass spectrometryMETLINacronymMALDI-TOFinductively coupled plasma-mass spectrometry (ICP-MS)accelerator mass spectrometry (AMS)thermal ionization-mass spectrometry (TIMS)spark source mass spectrometry (SSMS)isotope-ratio mass spectrometrychromatographicGas chromatography–mass spectrometrygas chromatographmetallicfilamentvoltageLiquid chromatography–mass spectrometryIndianapolis Museum of Artsolventslaser sprayCapillary electrophoresis–mass spectrometrycapillary electrophoresisIon-mobility spectrometry–mass spectrometryduty cycleMass spectrometry data formatmass chromatogramselected ion monitoringtotal ion currentcontour mapadductsTolueneMass spectrum analysisstructurepeptide sequencemass spectrasoftware assisted interpretation of mass spectraionizationa prioriin silicoSoftwareaccurate masstandem spectraaerosol mass spectrometerqualitativequantitativeisotopicgas phase ion chemistryelectric currentdeuteriumflowing afterglow mass spectrometryaccelerator mass spectrometercarbon datingMembrane-introduction mass spectrometryPhotosystem IIselected ion flow tubeproton transfer reactiontrace gassecondary electrospray ionizationResidual gas analyzermass spectrometerprocess controlvacuum systemshigh vacuumsurface scienceacceleratorsscanning microscopesin-situheliumisopropyl alcoholatom probePharmacokineticstriple quadrupole mass spectrometercurve fittingmicrodosinganimal experimentationProtein mass spectrometrysequencingtop-downpeptidesproteasestrypsinpepsinsolutionin gelelectrophoreticpeptide mass fingerprintingtandem MSde novo peptide sequencingbottom-upPhoenix Mars LanderViking programCassini–HuygensHuygens probeSaturnEnceladusThermal and Evolved Gas AnalyzerMars Phoenix Landermagnetosphereoperating roomanesthesiaBioelectrosprayDumas method of molecular weight determinationEvolved gas analysisHelium mass spectrometerIsotope dilutionMassBank (database)Mass spectrometry imagingMass spectrometry softwareMasSpec PenMicro-arrays for mass spectrometryNanoscale secondary ion mass spectrometryReflectronDalton TransactionsThomson JJBibcodeCiteSeerXRapid Commun Mass SpectromInt J Mass Spectrom Ion ProcLeone SRMass Spectrometry ReviewsInternational Journal of Mass SpectrometryChemical Physics LettersRapid Communications in Mass SpectrometrySouthwest Research InstituteSiuzdak GchemistryGlossary of chemical formulaeList of biomoleculesList of inorganic compoundsPeriodic tableAnalyticalInstrumental chemistryElectroanalytical methodsUV-VisSeparation processChromatographyCrystallographyCharacterizationTitrationWet chemistryCalorimetryElemental analysisTheoreticalQuantum chemistryComputational chemistryMathematical chemistryMolecular modellingMolecular mechanicsMolecular dynamicsMolecular 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spectrometerFlame emission spectrometerHigh-performance liquid chromatographInfrared spectrometerMelting point apparatusMicroscopeOptical spectrometerSpectrophotometerGravimetric analysisIon mobility spectrometryDilutionDissolutionFiltrationMaskingPulverizationSample preparationSub-samplingChemometricsCalibration curveMatrix effectInternal standardStandard additionAnalystAnalytica Chimica ActaAnalytical and Bioanalytical ChemistryAnalytical BiochemistryPathologyDiseaseInfectionNeoplasiaPathogenesisHemodynamicsIschemiaInflammationCell damageWound healingCellular adaptationAtrophyHypertrophyHyperplasiaDysplasiaMetaplasiaSquamousGlandularCell deathNecrosisCoagulative necrosisLiquefactive necrosisGangrenous necrosisCaseous necrosisFat necrosisFibrinoid necrosisMyocytolysisProgrammed cell deathApoptosisPyknosisKaryorrhexisKaryolysispigmentHemosiderinLipochromeLipofuscinMelaninSteatosisAnatomical pathologySurgical pathologyCytopathologyAutopsyMolecular pathologyForensic pathologyOral and maxillofacial pathologyGross processingHistopathologyImmunohistochemistryElectron microscopyImmunofluorescenceFluorescence in situ hybridizationClinical pathologyHematopathologyTransfusion medicineMedical microbiologyDiagnostic immunologyImmunopathologyEnzyme assayFlow cytometryBlood bankMicrobiological cultureSerologyMS softwareAcronymsMALDESIWien filterQuadrupole mass filterFT-ICRMicrochannel plate detectorDaly detectorFaraday cupLangmuir–Taylor detectorHybrid MSIMS/MSFragmentationProtein structural analysisCryogenic electron microscopyX-ray crystallographyElectron crystallographyFiber diffractionCircular dichroismDual-polarization interferometryAbsorbanceFluorescenceFluorescence anisotropySize exclusion chromatographyLight scatteringFlow birefringenceDielectric relaxationHydrogen–deuterium exchangeSite-directed mutagenesisChemical modificationEquilibrium unfoldingProtein structure predictionMolecular docking←Tertiary structureQuaternary structure→Quantitative proteomicsProteomicsLabel-free quantificationStable isotope labeling by/with amino acids in cell culture (SILAC)Isobaric labelingTandem mass tags (TMT)Isobaric tags for relative and absolute quantitation (iTRAQ)Isotope-coded affinity tags (ICAT)Metal-coded affinity tag (MeCAT)N-terminal labelingShotgun proteomicsTargeted proteomics / SRMData-independent acquisition